PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00917.1.g00050.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family S1Fa-like
Protein Properties Length: 80aa    MW: 8851.6 Da    PI: 10.5778
Description S1Fa-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00917.1.g00050.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1S1FA132.21.3e-411180270
                          S1FA  2 avakvea.kGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
                                  +v+++e+ kGlnPG+ivllvv++++l+f+vgny+lyv+aqk+lPP+kkkPvskkklkreklkqGv++PGe
  Zpz_sc00917.1.g00050.1.sm.mk 11 NVVIEEVnKGLNPGMIVLLVVASFMLLFFVGNYALYVFAQKTLPPKKKKPVSKKKLKREKLKQGVSAPGE 80
                                  67788888*************************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0190132.0E-151280No hitNo description
PfamPF046891.2E-381680IPR006779DNA binding protein S1FA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 80 aa     Download sequence    Send to blast
MAEQFADTAN NVVIEEVNKG LNPGMIVLLV VASFMLLFFV GNYALYVFAQ KTLPPKKKKP  60
VSKKKLKREK LKQGVSAPGE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0919812e-71FP091981.1 Phyllostachys edulis cDNA clone: bbasst002p11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633609.15e-32PREDICTED: DNA-binding protein S1FA2
SwissprotQ7XLX66e-34S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBLA0A0D3FVJ53e-32A0A0D3FVJ5_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9ZKE52e-32A0A0D9ZKE5_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0H0D22e-32A0A0E0H0D2_ORYNI; Uncharacterized protein
TrEMBLA0A0E0P8S32e-32A0A0E0P8S3_ORYRU; Uncharacterized protein
STRINGBGIOSGA015143-PA2e-31(Oryza sativa Indica Group)
STRINGLOC_Os04g33440.22e-31(Oryza sativa Japonica Group)
STRINGORGLA04G0086600.12e-31(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51543563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37120.14e-10S1FA-like DNA-binding protein